The Calendar of the Papers of Benjamin Franklin prepared by Isaac Minis Hays for the bicentennial of Franklin's birth in 1906 provides access to the largest portion of the Franklin Papers at the APS. The items were originally bound into volumes in roughly chronological order, with letters to Franklin preceding those from Franklin and at the end of the collection, Franklin's letters owned by the University of Pennsylvania. Each manuscript is still identified by Hays' reference numbers, which include a roman numeral refering to the original volume followed by an arabic number to identify the folio. The electronic version of the finding aid replicates Hays' calendar, including the introductory material and item-level descriptions. It has been updated to reflect corrections in the metadata, corrections of personal names, dates, and description.

Though the Miscellaneous Manuscripts collection is composed of items that do not fall readily into any other existing collection, the two dominant intellectual areas represented in the collection are Early American History and History of Science.